PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv1_007010_hamj.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family bHLH
Protein Properties Length: 247aa    MW: 27130.3 Da    PI: 6.7684
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv1_007010_hamj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.99.8e-051271651255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ ++++ L++l+ +      +K + a++L +A+ YI+ Lq
  Bv1_007010_hamj.t1 127 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYINFLQ 165
                         7788899*********998.....8*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.541115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.96E-5125169No hitNo description
SuperFamilySSF474594.45E-11125180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-9129183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSSLSSISTS SSTVDQMANN VQDGFDLFAT ARLLSGDNLT HSTPTTNHLL ELFKGSPQFG  60
VDYDLQQSND VKVCNNVANS NLSSFNNNGV TPESKKYTME PNLVHQMASK KQRFESRGTS  120
YPPLKVRKEK LGDRIAALQQ LVAPFGKTDT ASVLMEAIGY INFLQNQIET LSVPYMKLAS  180
RNKASNARRV SDDEYCESEE QKSIDLRSRG LCLVPVSCMS YINIASDATN SNVSIWPPST  240
YNSAAGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673050.10.0PREDICTED: transcription factor bHLH110-like
TrEMBLA0A0J8D4H40.0A0A0J8D4H4_BETVU; Uncharacterized protein
STRINGPOPTR_0005s25240.16e-55(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.14e-50bHLH family protein